Whole Wheat Pumpkin Muffins

Featured in: Wholesome Bakes

Enjoy moist, spiced muffins crafted from whole wheat flour and pumpkin puree, accented with cinnamon, ginger, nutmeg, and cloves. Each muffin is decorated with cheerful chocolate jack-o'-lantern faces for a playful touch, making them perfect for festive gatherings. Simple to bake and easy to customize with additions such as walnuts or applesauce, these treats offer a wholesome option for autumn and Halloween celebrations. Pair with spiced chai or apple cider for a comforting dessert.

Updated on Fri, 08 Aug 2025 12:14:00 GMT
Golden brown whole wheat pumpkin muffins, dotted with chocolate faces, ready for fall snacking. Save
Golden brown whole wheat pumpkin muffins, dotted with chocolate faces, ready for fall snacking. | oventhyme.com

Moist whole wheat pumpkin muffins with the perfect blend of spices and just the right amount of sweetness have become my favorite way to celebrate pumpkin season. These muffins are a staple at our autumn gatherings and always disappear quickly at Halloween parties thanks to their playful jack-o-lantern faces. The whole wheat flour keeps things wholesome while pumpkin puree makes them extra tender. Perfectly spiced and easy to decorate with family or friends, these muffins bring out the festive spirit in everyone.

I first baked a batch for my kids’ school party and ended up making a second round the same night because neighbors had come by after catching the aroma. Baking and decorating them together is now a yearly tradition.

Ingredients

  • Whole wheat flour: gives these muffins a nutty flavor and denser texture. Choose finely milled for the best crumb
  • Baking powder: lifts each muffin so they turn out fluffy
  • Baking soda: helps activate the acid in the pumpkin for tender results
  • Salt: balances the sweetness and deepens flavors
  • Ground cinnamon: gives classic warm sweetness
  • Ground ginger: adds gentle heat
  • Ground nutmeg: brings earthy depth choose freshly grated for aroma
  • Ground cloves: pack a little punch for that signature pumpkin spice blend
  • Canned pumpkin puree: is essential for moisture and that unmistakable autumn taste always pick pure pumpkin not pie filling
  • Vegetable oil or melted coconut oil: keeps muffins soft and moist go for fresh oil for best taste
  • Brown sugar: adds deep molasses sweetness
  • Granulated sugar: offers lightness and lift
  • Large eggs: bind everything together and contribute to muffin structure
  • Vanilla extract: smooths and rounds out spiced flavors use pure vanilla if possible
  • Milk (dairy or plant-based): keeps the batter loose and bakes up tender
  • Mini chocolate chips or melted dark chocolate: will create fun faces higher-cocoa chocolate gives bold flavor
  • Small green candies or pumpkin seeds: make perfect little decorative stems

Instructions

Prep the Muffin Tin:
Line a 12-cup muffin tin with paper liners or grease lightly to prevent sticking and get a tidy release
Mix the Dry Ingredients:
Combine whole wheat flour baking powder baking soda salt cinnamon ginger nutmeg and cloves in a large bowl Whisk thoroughly to spread the leaveners and spices evenly so each muffin tastes just right
Whisk the Wet Ingredients:
In a separate bowl whisk together the pumpkin puree oil brown sugar granulated sugar eggs vanilla extract and milk mixture should look smooth and uniform This step is key for avoiding clumps
Combine Wet and Dry:
Pour wet mixture into the dry ingredients Gently fold with a spatula until just combined Some streaks of flour are fine Over-mixing can lead to dense muffins
Fill the Muffin Cups:
Spoon the batter into each prepared muffin cup filling about three quarters full This gives them space to rise and dome
Bake:
Place tin in the center of a preheated 350 degree Fahrenheit oven Bake for twenty to twenty two minutes Muffins should spring back when touched on top and a toothpick inserted into the center comes out mostly clean
Cool:
Let the muffins rest in the tin for five minutes to finish setting then transfer to a wire rack to cool completely This prevents soggy bottoms
Decorate:
Once cooled use mini chocolate chips or pipe melted dark chocolate to draw jack-o-lantern faces on each muffin For stems add a pumpkin seed or green candy to the top for a festive finish
Warm, fragrant whole wheat pumpkin muffins fresh from the oven; a delightful autumn treat. Save
Warm, fragrant whole wheat pumpkin muffins fresh from the oven; a delightful autumn treat. | oventhyme.com

Each year our table fills with smiling muffin faces and laughter over chocolate mishaps It is these small traditions that make autumn my favorite season

Storage Tips

Let muffins cool fully before storing Place in an airtight container at room temperature for up to three days or refrigerate for a week For longer storage freeze muffins individually wrapped and thaw overnight for perfect texture If decorating ahead let icing or chocolate set before layering to prevent smudges Avoid storing with uncovered fruits or breads that can add excess moisture A quick turn in a warm oven revives their just-baked character

Ingredient Substitutions

Swap vegetable oil for melted coconut oil for a subtle tropical note No brown sugar Try coconut sugar or all white sugar but note this will slightly change the taste and color Dairy allergies Use any plant milk like almond soy or oat for the same tenderness Want more texture Stir in chopped toasted walnuts pecans or even sunflower seeds for a rustic vibe Canned pumpkin can be replaced with homemade pumpkin puree just make sure it is not watery

Serving Suggestions

Enjoy warm with spiced chai hot cocoa or apple cider Pack them in lunchboxes for a nourishing treat For a dessert platter add a dollop of vanilla or maple yogurt alongside the decorated muffins For an extra Halloween flair nestle muffins in festive wrappers and use fun candies for eyes They also make a sweet breakfast on cool fall mornings

Cultural and Seasonal Inspiration

Pumpkin muffins are a classic across many American kitchens especially popular when crisp weather returns Decorating with chocolate faces and pumpkin seeds turns simple muffins into Halloween treats that excite kids and adults alike Baking with whole wheat flour and real pumpkin nods to the wholesome traditions of harvest festivals

Seasonal Adaptations

Add half a cup of quick-cooking oats for even more autumn heartiness Mix in diced dried cranberries or chopped apples for a fruity twist Top with maple glaze after cooling for an extra sweet treat

Success Stories

Many new bakers have told me this is their first successful pumpkin recipe Kids love to help make the faces and often get creative with their own monster or silly jack-o-lantern designs The muffins have made appearances at fall potlucks family breakfasts and classroom parties where they are always among the first plates emptied Several friends now ask for this recipe every October and send photos of their decorated creations

Freezer Meal Conversion

To freeze keep decoration minimal until after thawing Wrap cooled undecorated muffins tightly in plastic then place in a zip bag Freeze for up to three months Thaw at room temperature or gently warm in the oven or microwave before serving Add faces just before serving to keep the chocolate details crisp

Homemade whole wheat pumpkin muffins displayed on a wire rack, decorated with jack-o'-lantern faces. Save
Homemade whole wheat pumpkin muffins displayed on a wire rack, decorated with jack-o'-lantern faces. | oventhyme.com

The world feels a little warmer when pumpkin muffins fill the kitchen. Bake and share these festive treats for an autumn everyone will remember.

Kitchen Guide

How can I make pumpkin muffins extra moist?

Add unsweetened applesauce to the batter or be careful not to overbake for a soft, moist texture.

Can I use coconut oil instead of vegetable oil?

Yes, coconut oil adds a subtle flavor twist and works well as a substitute in these muffins.

Are these muffins suitable for a vegetarian diet?

Yes, these muffins are vegetarian; use plant-based milk if avoiding dairy.

What decorations work best for jack-o'-lantern faces?

Melted chocolate or mini chocolate chips make perfect faces. Green candies or seeds can be used as stems.

How do I store pumpkin muffins to keep them fresh?

Store cooled muffins in an airtight container at room temperature for up to three days, or refrigerate for longer freshness.

Can I add nuts to these muffins?

Absolutely! Chopped walnuts or pecans bring additional texture and flavor.

Whole Wheat Pumpkin Muffins

Spiced whole wheat pumpkin muffins with chocolate faces, perfect for autumn and Halloween celebrations.

Prep duration
20 min
Kitchen time
22 min
Complete duration
42 min
Created by Grace Mitchell


Skill level Easy

Heritage American

Output 12 Portions

Dietary requirements Meat-free

What you'll need

Dry Ingredients

01 1 3/4 cups whole wheat flour
02 1 teaspoon baking powder
03 1/2 teaspoon baking soda
04 1/2 teaspoon salt
05 1 1/2 teaspoons ground cinnamon
06 1/2 teaspoon ground ginger
07 1/4 teaspoon ground nutmeg
08 1/4 teaspoon ground cloves

Wet Ingredients

01 1 cup canned pumpkin puree
02 1/2 cup vegetable oil or melted coconut oil
03 1/2 cup brown sugar
04 1/4 cup granulated sugar
05 2 large eggs
06 1 teaspoon vanilla extract
07 1/4 cup milk

Decorations

01 1/2 cup mini chocolate chips or melted dark chocolate
02 Small green candies or pumpkin seeds for stems (optional)

Method

Phase 01

Prepare Baking Equipment: Preheat oven to 350°F. Line a 12-cup muffin tin with paper liners or lightly grease each cup.

Phase 02

Combine Dry Ingredients: In a large bowl, whisk together whole wheat flour, baking powder, baking soda, salt, cinnamon, ginger, nutmeg, and cloves until evenly mixed.

Phase 03

Blend Wet Ingredients: In a separate bowl, whisk pumpkin puree, oil, brown sugar, granulated sugar, eggs, vanilla extract, and milk until smooth.

Phase 04

Mix Batter: Pour wet mixture into the dry ingredients and gently stir just until incorporated. Avoid overmixing to maintain tenderness.

Phase 05

Fill Muffin Tin: Spoon batter evenly into muffin cups, filling each approximately three-quarters full.

Phase 06

Bake: Place tin in the oven and bake for 20 to 22 minutes, or until a toothpick inserted in the center of a muffin emerges clean.

Phase 07

Cool: Allow muffins to cool in the tin for 5 minutes. Transfer to a wire rack and let cool completely before decorating.

Phase 08

Decorate: Use melted chocolate piped from a bag or a toothpick, or place mini chocolate chips, to create jack-o'-lantern faces atop the cooled muffins. Add green candies or pumpkin seeds as stems if desired.

Kitchen tools needed

  • 12-cup muffin tin
  • Mixing bowls
  • Whisk
  • Spatula
  • Wire rack
  • Piping bag or toothpick for decorating

Allergy notes

Always review ingredients for potential allergens and seek professional medical advice when uncertain.
  • Contains eggs and wheat (gluten). May contain dairy if prepared with cow's milk. Chocolate and candies may contain traces of nuts or soy; check labels for allergens.

Nutrition breakdown (per portion)

Values shown are estimates only - consult healthcare providers for specific advice.
  • Energy: 200
  • Fats: 8 g
  • Carbohydrates: 30 g
  • Proteins: 3 g